Consortium Updates
Welcome to the Cell Migration Consortium's updates page, where we highlight major additions of data and information, and outline some of the publications appearing as a result of the Consortium's activities.
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May 2012
- Kinase sensors demonstrate their power to shine
- Cells change tack through branch-and-pivot mechanism
- Other CMC Publications
- Upcoming Conferences & Workshops
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Kinase sensors demonstrate their power to shine
Currently available techniques for assessing the activities of protein kinases in biological samples rely on the use of indirect proxies for catalytic activity in antibody- or mass spectrometry-based approaches, so the development of sensors that can report directly on enzymatic activity would be highly advantageous. Barbara Imperiali’s group recently extended a strategy based on chelation-enhanced fluorescence to monitor kinase activity in unfractionated cell lysates by developing a cysteine derivative of the phosphorylation-sensitive fluorescent amino acid Sox, termed CSox, for use with kinase-selective substrates. In Chemistry & Biology, the group reports on the use of a panel of selective sensors to assess the activity of individual kinases during skeletal muscle differentiation and to analyze alterations in kinase signaling in human tumors. During myoblast differentiation into myotubes, the activities of protein kinase A (PKA) and Akt increased; extracellular signal-regulated kinase (ERK)1/2 and MAPK-activated protein kinase-2 (MK2) showed a biphasic activity profile; and p38α activity decreased, consistent with results from immunoprecipitation–kinase assays. Lysates prepared easily and rapidly from tumor and healthy control tissues from patients with breast, prostate or lung cancers yielded kinase activity profiles that correlated with western blotting experiments and that reflected the specific biochemistry of individual tumors. The studies suggest that when kinase profiling shows elevated levels of certain kinase activities, then combining tamoxifen with ERK inhibitors might prevent the development of endocrine-resistant breast tumors, while increased PKA activity could provide a marker for aggressive prostate cancer. Moreover, Akt and p38α could potentially be targeted therapeutically in lung tumors, given their aberrant increased activity. Provided that appropriate substrate sequences can be identified, CSox sensors that measure the activities of an unlimited number of tyrosine and serine/threonine kinases could be generated, with potential wide-ranging research and clinical benefits.
- Stains CI, Tedford NC, Walkup TC, Luković E, Goguen BN, Griffith LG, Lauffenburger DA, Imperiali B. Interrogating signaling nodes involved in cellular transformations using kinase activity probes. Chem Biol. 2012 Feb 24;19(2):210-7. PubMed
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Cells change tack through branch-and-pivot mechanism
During random migration, fibroblasts and other mesenchymal cells move slowly and show relatively long-lived directionality, with changes in orientation being induced by stochastic turning behavior. In The Journal of Cell Biology, Welf et al. outline a mechanism for reorientation that is mediated by phosphoinositide 3-kinase (PI3K)-dependent branching and pivoting of lamellipodial protrusions. The authors used a fluorescent biosensor to generate spatiotemporal maps of PI3K signaling ‘hotspots’, protrusion/retraction velocity and morphological extension by total internal fluorescence microscopy in randomly migrating fibroblasts. Analysis of these maps revealed that cells made significant turns by the branching of a protrusion into two followed by the pivoting of these branched protrusions, and that marked changes in cell orientation correlated with changes in PI3K activity. Inhibiting PI3K activity abrogated fibroblast reorientation by such branching and pivoting — not by inhibiting the initiation of branched protrusions but, rather, by preventing their spreading and propagation. Indeed, PI3K signaling increased after the initiation of protrusion, during the transition from nascent to mature integrin-mediated adhesions. Accordingly, inhibiting PI3K activity also failed to prevent protrusion induced by a photoactivatable form of Rac. Fibroblasts undergo chemotaxis in response to platelet-derived growth factor (PDGF), and Welf et al. showed that PDGF gradient stimulation biased the branch-and-pivot mechanism so that PI3K signaling and protrusion were greater in the branch nearest the highest concentration, resulting in better alignment of cell movement towards the attractant. Following reorientation, cells then tracked the gradient with only minor changes in morphology; or, in the absence of a gradient, again underwent random migration with stochastic turning.
- Welf ES, Ahmed S, Johnson HE, Melvin AT, Haugh JM. Migrating fibroblasts reorient directionality by a metastable, PI3K-dependent mechanism. J Cell Biol. 2012 Apr 2;197(1):105-14 PubMed
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Other CMC Publications
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Kim J, Sherman NE, Fox JW, Ginsberg MH. Phosphorylation sites in the cerebral cavernous malformations complex. J Cell Sci 2012; 124 (Pt 23):3929-32. PubMed
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Welf ES, Haugh JM. Stochastic models of cell protrusion arising from spatiotemporal signaling and adhesion dynamics. Methods Cell Biol 2012; 110:223-41. PubMed
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Upcoming Conferences & Workshops
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Gordon Research Conferences: Signaling by Adhesion Receptors June 24 - 29, 2012 Maine, USA:
For more details and to register, visit the meeting web site at http://www.grc.org/programs.aspx?year=2012&program=signadhe
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7th Abercrombie Meeting June 25 - 27, 2012 Oxford, UK:
The 7th Abercrombie meeting "Multi-dimensional cell migration in development and disease” will be held at St Catherine’s College, Oxford from 24th-27thJune 2012. For more details and to register visit the meeting website at http://www.rms.org.uk/events/Forthcoming_Events/Abercrombie+Meeting
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April 2012
- Push-pull model proposed to mediate podosome dynamics
- Inter-domain associations determine talin’s cellular locations
- Other CMC Publications
- Upcoming Conferences & Workshops
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Push-pull model proposed to mediate podosome dynamics
Podosomes – dynamic adhesion structures that mediate migration and invasion in monocyte-derived cells – comprise a core actin bundle linked to a membrane-bound ring of adhesion plaque proteins. To gain insights into the molecular processes involved in the formation and disassembly of podosomes, Luxenburg et al. studied these dynamic structures in osteoclasts, using live-cell microscopy and high-resolution scanning electron microscopy. They report in the Journal of Cell Science that the local accumulation of the plaque proteins paxillin, an adaptor protein, and cortactin, an actin-nucleation-promoting and actin-stabilizer protein, initiated podosome formation. Growth of the actin core was promoted by the subsequent bundling of polymerized actin by α-actinin, prior to a substantial increase in the levels of ß3 integrin in the ring domain. These results, alongside previous data, imply a role for actin dynamics in podosome formation and stability, which the authors investigated further using low concentrations of cytochalasin D to attenuate actin polymerization. Notably, concentrations of cytochalasin D that were low enough to slow down actin polymerization but not destroy the filaments, led to the deterioration of podosomes by inducing the loss of plaque proteins. In contrast, inhibiting actomyosin-induced contractility using blebbistatin had little effect on podosome structure in this study. Consistent with a requirement for actin polymerization for the recruitment and maintenance of plaque components in the ring domain, Luxenburg et al. present a model in which tension created by actin polymerization generates opposing mechanical forces that could, in turn, regulate the stability of the plaque components: a downward, pushing force from the elongating core; and a pulling force from the radial fibers connecting the membrane-associated plaque proteins to the core.
- Luxenburg C, Winograd-Katz S, Addadi L, Geiger B. Involvement of actin polymerization in podosome dynamics. J Cell Sci. 2012 Feb. 10. [Epub ahead of print] PubMed
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Inter-domain associations determine talin’s cellular locations
At the plasma membrane, talin can modulate the affinity of integrin receptors for their ligands and link them to the actin cytoskeleton; however, talin is abundant in the cytosol. By combining nuclear magnetic resonance (NMR) spectroscopy with subcellular fractionation experiments, Banno et al. have structurally defined specific interactions that occur between different talin domains to regulate its subcellular localization and, consequently, its function. Talin comprises a globular head domain (THD), which contains a FERM domain made up of F1, F2 and F3 subdomains, within which are integrin-binding sites and lipid-binding sites; a short, flexible linker; and a rod domain containing a series of α-helical bundles, one of which is designated domain E. Autoinhibitory interactions occur between THD and the rod domain, so the authors mapped the interactions that regulated talin’s localization. The presence of domain E maintained talin within the cytosol by mediating an electrostatic interaction with the F3 domain of THD. However, disrupting the domain E–THD interaction did not confer plasma membrane localization; instead, it enabled talin to associate with cytoskeletal actin. Plasma membrane localization was, however, promoted by the loss of a region in the rod domain that contains two helical bundles (VBS1 and VBS2a), to which vinculin binds. NMR analysis showed that VBS1–VBS2a interacted with the F2F3 domain of THD; disrupting this interaction targeted talin to the plasma membrane. Consistent with reports that vinculin activates integrins in a talin-dependent manner, expression of the vinculin head domain, which binds to VBS1–VBS2a, resulted in talin recruitment to the plasma membrane. So, the subcellular localization of talin is regulated by specific inter-domain interactions between the THD and the rod domain and can be regulated by vinculin binding.
- Banno A, Goult BT, Lee H, Bate N, Critchley DR, Ginsberg MH. Subcellular localization of talin is regulated by inter-domain interactions. J Biol Chem. 2012 Feb 18. [Epub ahead of print] PubMed
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Other CMC Publications
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Digman MA, Gratton E. Scanning image correlation spectroscopy. Bioessays. 2012 Mar 13. doi: 10.1002/bies.201100118. [Epub ahead of print] PubMed
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Upcoming Conferences & Workshops
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7th Abercrombie meeting, Oxford, England June 24-27, 2012:
The 7th Abercrombie meeting "Multi-dimensional cell migration in development and disease” will be held at St Catherine’s College, Oxford from 24th-27thJune 2012. For more details and to register visit the meeting website at http://www.rms.org.uk/events/Forthcoming_Events/Abercrombie+Meeting
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Gordon Cnference: Signaling by Adhesion Receptors,June 24 - 29, 2012 Maine, USA:
For more details and to register visit the conference website at http://www.grc.org/programs.aspx?year=2012&program=signadhe
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March 2012
- Polarization: sense the substrate to elongate
- Catching microtubules on the run
- Upcoming Conferences & Workshops
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Polarization: sense the substrate to elongate
Fibroblasts have the capacity to sense rigidity when cultured on extracellular matrices (ECMs) of differing degrees of stiffness, as well as being able to polarize on an appropriate ECM. In studying the molecular mechanism underlying these two properties, Prager-Khoutorsky et al. have established that they are interrelated. On a rigid substrate (2 MPa), cells polarized readily and displayed larger, less dynamic and uniformly oriented focal adhesions compared to cells plated on compliant (5 kPa) substrates, which failed to polarize and formed numerous, but smaller and radially oriented, focal adhesions. The authors showed by time-lapse microscopy that focal adhesions aligned in the direction of the prospective elongation axis prior to polarization, but only on a rigid surface, highlighting the requirement for focal adhesion–stress-fiber mechanosensitivity. In a short interfering RNA screen of 85 tyrosine kinases, the knockdown of 20 genes significantly altered rigidity-dependent cell polarization. Of these, 12 genes that might affect cell polarization by regulating the formation of focal adhesions and the response to substrate rigidity were identified; within this group was a small subset of genes, which, when knocked down, uncoupled focal adhesion size from the strength of the applied traction forces. So, the results suggest that tyrosine kinases, by regulating traction force generation and focal adhesion formation, have a key role in controlling the cell polarization response to substrate rigidity.
- Prager-Khoutorsky M, Lichtenstein A, Krishnan R, Rajendran K, Mayo A, Kam Z, Geiger B, Bershadsky AD. Fibroblast polarization is a matrix-rigidity-dependent process controlled by focal adhesion mechanosensing. Nat Cell Biol. 2011 Nov 13;13(12):1457-65 PubMed
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Catching microtubules on the run
Labeling plus-end-binding proteins (+TIPs) offers a means of tracking microtubules, but provides mainly qualitative data that are limited to phases of microtubule growth; quantitative characterization of pause and shrinkage, in addition to growth, is required to gain insight into how microtubule dynamics affect processes such as cell polarization and migration. In the Journal of Structural Biology, Applegate et al. present a Matlab-based, user-friendly, open source software package that combines previously validated algorithms and published state-of-the-art technology to link collinear, sequential growth tracks to infer parameters such as shrinkage velocity or pause duration. Using only +TIP markers of microtubule growth, plusTipTracker enables automated tracking, visualization and analysis of microtubule dynamics in live cells. The researchers used a movie of a human endothelial cell expressing the fluorescently tagged +TIP EB3 to highlight a number of pivotal features of the software functionality, such as its robustness, speed and self-adaptiveness in detecting +TIP comets. Its efficiency enables thousands of reconstructed microtubule tracks to be obtained from one cell, providing an abundance of quantitative information — via several visualization modalities and bioinformatics tools — about the architecture of microtubule networks, such as the spatial regulation of microtubule growth speed and the relative subcellular distribution of growing, shrinking and pausing microtubules. These powerful properties of plusTipTracker offer not only a vast improvement in microtubule tracking, which will undoubtedly reveal insights into microtubule regulation that extend beyond cell migration, but also the possibility of developing high-content screens that assess microtubule cytoskeleton dynamics in live cells.
- Applegate KT, Besson S, Matov A, Bagonis MH, Jaqaman K, Danuser G. plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics. J Struct Biol. 2011 Nov;176(2):168-84 PubMed
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Upcoming Conferences & Workshops
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7th Abercrombie meeting, Oxford, England June 24-27, 2012:
The 7th Abercrombie meeting "Multi-dimensional cell migration in development and disease” will be held at St Catherine’s College, Oxford from 24th-27thJune 2012. For more details and to register visit the meeting website at http://www.rms.org.uk/events/Forthcoming_Events/Abercrombie+Meeting
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February 2012
- The actin cytoskeleton in endocytosis: pushing the latest model
- Probing phosphorylation-mediated protein partnerships
- Consortium Data Additions & Site Updates
- Upcoming Conferences & Workshops
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The actin cytoskeleton in endocytosis: pushing the latest model
The actin cytoskeleton is important in clathrin-mediated endocytosis, but a lack of high-resolution data relating to the actin architecture at clathrin-coated structures (CCSs) has precluded elucidation of its exact role in this dynamic process. Collins et al. initially used detergent extraction to expose the cytoskeleton for metal shadowing by platinum replica electron microscopy, and observed CCS-associated actin patches that comprised short branched filaments and resembled small ruffles or comet tails. However, they subsequently studied ‘unroofed’ cells with an intact ventral membrane to avoid the potential loss of shallow pits during detergent extraction. Electron microscopy revealed that CCSs associated with very small lateral actin patches, collar-like and comet-like networks, all of which contained very short and densely branched actin filaments. The use of myosin subfragment 1 to decorate the actin filaments indicated that the barbed ends oriented towards the CCSs to thereby generate a pushing force. Furthermore, the pointed-end sides of the patch appeared to be anchored to a long linear actin filament from the surrounding lamellar cytoskeleton, which potentially functions as a coactivator for the Arp2/3 complex alongside nucleation-promoting factors. Finally, Collins et al. combined platinum replica electron microscopy with electron tomography to show that the very small actin patches most frequently associated with shallow CCSs, the larger actin patches encircled more-invaginated CCSs and the comet-tail-like shapes were linked with the appearance of spherical CCSs. Based on their findings, the authors put forward a model for the initiation, evolution and function of the dendritic actin network at CCSs, the primary role for which is to constrict and elongate the bud neck and drive the endocytosed vesicles from the plasma membrane.
- Collins A, Warrington A, Taylor KA, Svitkina T. Structural organization of the actin cytoskeleton at sites of clathrin-mediated endocytosis. Curr Biol. 2011 Jul 26;21(14):1167-75 PubMed
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Probing phosphorylation-mediated protein partnerships
The cerebral cavernous malformation (CCM) multiprotein complex cell-autonomously regulates the stability of endothelial and epithelial cell–cell junctions, and is therefore important in vascular development. KRIT1 (also known as CCM1) and CCM2 are thought to form the core of this protein complex, but to gain further insight into the mechanism(s) and regulation of complex assembly, Kim et al. attached a tandem affinity purification (TAP) tag to KRIT1/CCM1 to isolate associated proteins. They confirmed previously reported interactions of KRIT1/CCM1 with CCM2, ICAP1α (an integrin-binding protein), and heart of glass (HEG, a transmembrane receptor), before analysing phosphorylation sites within the complex. The only high-stoichiometry phosphorylation site in KRIT1/CCM1 was Ser22, which can be targeted by protein kinase A or casein kinase I. Two lower-stoichiometry phosphorylation sites — at Thr151 and Tyr252 — were also found. Tyr252, which has been implicated in CCM2 binding and nuclear retention of KRIT1/CCM1, is a putative target of Janus kinase 2. The authors postulate that the phosphorylation of multiple Ser/Thr sites, which they identified throughout CCM2, might regulate the interaction of this core complex component with other proteins. Phosphorylation of Ser164, Ser166 or Ser168 within the phosphotyrosine-binding domain domain might, for example, influence the binding of CCM2 to KRIT1/CCM1. Several phosphorylation sites were identified in the amino-terminal Ser/Thr-rich domain of ICAP1. Phosphorylation of Thr38, which is known to increase the affinity of ICAP1 for integrin β1 and thereby suppress integrin activation by talin, was not detected in this study; however, this could reflect an increased association of ICAP1 with KRIT1/CCM1 in the absence of Thr38 phosphorylation potentially favored by the TAP protocol. No phosphorylation sites were detected in HEG1.
The data associated with this publication can be accessed and manipulated through the Cell Migration Gateway, here http://www.cellmigration.org/resource/proteomics/data/phospho_index.shtml
- Kim J, Sherman NE, Fox JW, Ginsberg MH. Phosphorylation sites in the cerebral cavernous malformations complex. J Cell Sci. 2011 Dec 1;124(Pt 23):3929-32 PubMed
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Consortium Data Additions & Site Updates
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New data posting; Proteomic Analysis of Integrin Associated Complexes
The data published in: JD Humphries, A Byron, MD Bass, SE Craig, JW Pinney, D Knight, MJ Humphries. (2009) "Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6." Science Signaling 2:ra51 PubMed can be accessed and manipulated through the Cell Migration Gateway here www.cellmigration.org/resource/proteomics/humphries/integrin_int.cgi
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Upcoming Conferences & Workshops
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Biophysical Society 2012 Annual Meeting – February 25-29, San Diego, CA:
For more details and to register visit the meeting web site at http://www.biophysics.org/2012meeting/
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January 2012
- A rough guide to sealing-zone dynamics
- Retinal angiogenesis: fibronectin performs a two-fold function
- Other CMC Publications
- Upcoming Conferences & Workshops
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A rough guide to sealing-zone dynamics
Acid and proteolytic enzymes secreted into a ‘resorption lacuna’ mediate the bone-degrading activities of osteoclasts, but degradation lacunae must be sealed and, for resorption to be effective, the ‘sealing zone’ should be continuous and stable over time. However, this ring-like superstructure, which comprises a central ring of filamentous actin that is formed from a network of interlinked podosomes and is surrounded on the inside and outside by integrins and adhesion plaque proteins, varies both in structure and dynamics, depending on the nature of the underlying matrix. To investigate how sealing-zone dynamics are influenced by local topography, Geblinger et al. prepared surfaces with a gradient of roughness values as substrates for osteoclast adhesion. By subjecting a focal series of sealing-zone images of cells to three-dimensional deconvolution, the authors observed that the sealing zone adapted to the surface topography, showing increased integrity and stability with increasing surface roughness. Furthermore, they found that ‘ridge-like barriers’ of up to several micrometers high that were parallel to the perimeter of the sealing-zone could stop its expansion, but that the arrested regions could be ‘pulled’ by neighboring regions extending through obstacle-free areas. When expansion of the ring was restricted in all directions — for example, by steep slopes — the sealing zone became stable and continuous. As the ability of osteoclasts to sense roughness is expressed at wavelengths of over 3 μm, which are larger than the size of an individual podosome, Geblinger et al. propose that topography sensing requires the global mechanical integration of interconnecting podosomes via an actin-based network — podosomes are directly attached to the underlying surface, so differences in the altitudes of neighboring podosomes would be transferred to the cytoskeleton.
- Geblinger D, Zink C, Spencer ND, Addadi L, Geiger B. Effects of surface microtopography on the assembly of the osteoclast resorption apparatus. J R Soc Interface. 2011 Nov 16. [Epub ahead of print]. PubMed
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Retinal angiogenesis: fibronectin performs a two-fold function
During the development of the retinal vascular system, astrocytes guide the leading tips of endothelial cells by depositing a provisional extracellular matrix (ECM). The precise involvement of the major ECM component fibronectin in retinal angiogenesis has so far not been addressed. Stenzel et al. have now shown that fibronectin is expressed and deposited by astrocytes ahead of the growing retinal vasculature in mice, and have taken a genetic approach to elucidate its function. Using Cre-lox-mediated recombination, the authors specifically ablated fibronectin expression in astrocytes ahead of the growing vasculature, causing a decrease in the radial expansion of the vascular plexus through reduced tip-cell migration. Surprisingly, although endothelial cells express both integrin α5 and integrin β1, which mediate binding to fibronectin, endothelium-specific ablation of integrin α5 caused only a marginal reduction in radial migration, suggesting that endothelial α5β1 is not necessary for outgrowth; instead, it supports the alignment and adhesion of filopodia to the astrocytic scaffold. Binding of vascular endothelial growth factor (VEGF) to fibronectin was recently reported to be required for endothelial cell migration, and Stenzel et al. observed that the absence of fibronectin reduced VEGF receptor (VEGFR)2-mediated signaling through phosphoinositide 3-kinase and Akt. They also showed that the blocking peptide FnIII13–14, which inhibits VEGF–fibronectin binding, inhibited endothelial cell migration in cell culture and significantly reduced the radial expansion of retinal vessels when injected intraocularly, coincident with a decrease in phosphorylation of VEGFR2 and Akt. VEGF also interacts with heparan-sulfate proteoglycans, the expression pattern of which resembles that of fibronectin on astrocytes, and the authors showed, using genetic deletion, that both of these ECM components synergize to promote the directional migration of endothelial tip cells. So fibronectin carries out both integrin-binding and growth-factor-binding functions during retinal angiogenesis.
- Stenzel D, Lundkvist A, Sauvaget D, Busse M, Graupera M, van der Flier A, Wijelath ES, Murray J, Sobel M, Costell M, Takahashi S, Fässler R, Yamaguchi Y, Gutmann DH, Hynes RO, Gerhardt H. Integrin-dependent and -independent functions of astrocytic fibronectin in retinal angiogenesis. Development. 2011 Oct;138(20):4451-63. PubMed
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Other CMC Publications
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Karginov AV, Hahn KM. Allosteric Activation of Kinases: Design and Application of RapR Kinases. Curr Protoc Cell Biol 2011; Chapter 14:Unit14 3. PubMed
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Ofer N, Mogilner A, Keren K. Actin disassembly clock determines shape and speed of lamellipodial fragments. Proc Natl Acad Sci U S A 2011; PubMed
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Anderegg F, Geblinger D, Horvath P, Charnley M, Textor M, Addadi L, Geiger B. Substrate adhesion regulates sealing zone architecture and dynamics in cultured osteoclasts. PLoS One 2011; 6 (12):e28583. PubMed
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Ye F, Kim C, Ginsberg MH. Molecular mechanism of inside-out integrin regulation. J Thromb Haemost 2011; 9 Suppl 1:20-5. PubMed
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Upcoming Conferences & Workshops
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Biophysical Society 2012 Annual Meeting – February 25-29, San Diego, CA:
The Early Registration Deadline and Late Abstract submission deadline for this meeting is January 8, 2012. For more details and to register visit the meeting web site at http://www.biophysics.org/2012meeting
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